PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G212800.1
Common NameB456_010G212800, LOC105772184
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 649aa    MW: 73872.7 Da    PI: 7.8855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G212800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09463504240
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         ++WT+eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Gorai.010G212800.1 463 KPWTKEEIELLRKGTQKYPKGtshRWEVISEYIGTGRSVEEI 504
                         69***********************************99876 PP

2Myb_DNA-binding27.28.9e-09591635345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  +  l++a k ++++   +W+++a  ++ g+t +qck ++ 
  Gorai.010G212800.1 591 VWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 635
                         6********************************.********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.83E-2092175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.7E-2194199IPR001623DnaJ domain
SMARTSM002712.1E-1496171IPR001623DnaJ domain
CDDcd062578.66E-1397168IPR001623DnaJ domain
PfamPF002261.7E-1697176IPR001623DnaJ domain
PROSITE profilePS5007618.34997179IPR001623DnaJ domain
PRINTSPR006251.6E-7102120IPR001623DnaJ domain
PRINTSPR006251.6E-7120135IPR001623DnaJ domain
PRINTSPR006251.6E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.3E-6456504IPR009057Homeodomain-like
PROSITE profilePS512937.076460515IPR017884SANT domain
SMARTSM007171.9E-7461514IPR001005SANT/Myb domain
PfamPF002492.2E-7463504IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-8463506IPR009057Homeodomain-like
CDDcd001677.34E-6464504No hitNo description
PROSITE profilePS5129310.24587642IPR017884SANT domain
SMARTSM007173.8E-9588640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5589634IPR009057Homeodomain-like
SuperFamilySSF466892.69E-9590644IPR009057Homeodomain-like
PfamPF002492.2E-7591634IPR001005SANT/Myb domain
CDDcd001672.69E-6592638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAVRTSIQLI AYSQELVDGQ PLYVSSNCLP VKALKYEPAG HAFHNAALKL FGCEEDDTTE  60
VDDQKVGNDK EQVYMPSSDS YSSKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPI KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STSLKDVDNF YNFWYSFKSW  240
REFPHADEYD LEQSESRDHK RWMERQNAKL SEKARKEEYA RIRALVDNAY KRDPRILRRK  300
EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERRRKEEEE KRAAEAALQH KKNKEKEKKL  360
LRKERTRLRA LSAPVLSQHL LDLSEEDVES LCMTLGFEQL RSLCDKMDNK EALERAKLIQ  420
DARGYNSNTE EKKIDDTNGS HLNGSVDSNG SILSSSSSEK KEKPWTKEEI ELLRKGTQKY  480
PKGTSHRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFDSFLEKRK PAATIASPLS  540
TREEVEGVSM PSRTENTTAK TSSAEDSGKA ASNPVDVVSG NGVSSSSEQD VWSAVQERAL  600
IQALKTFPKE TSQRWERVAT AVPGKTVNQC KKKFALLKEN FRSKKSTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448954.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_012448955.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A0D2UGD30.0A0A0D2UGD3_G
STRINGPOPTR_0001s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]